Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs60220964 chr13:106590049 A/G 7.9E-5 118 38.33 56.8 28.43 KM Plot
THYM rs60228619 chr19:43338574 G/T 0.000134 118 44.38 26 28.43 KM Plot
THYM rs60236304 chr19:43352212 A/T 0.000134 118 44.38 26 28.43 KM Plot
THYM rs60325031 chr4:115609121 C/T 0 118 38.33 44.58 4.13 KM Plot
THYM rs60432569 chr4:115547671 G/C 0 119 38.23 52.95 4.13 KM Plot
THYM rs60447508 chr6:151427698 C/T 0 118 38.13 54.08 4.13 KM Plot
THYM rs60499434 chr11:125580714 A/G 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs60537941 chr4:12544524 A/G 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs60659750 chr12:86941569 A/G 0 118 38.13 57.23 4.13 KM Plot
THYM rs6071435 chr20:59502888 A/T 0.000319 119 38.33 42.25 28.83 KM Plot
THYM rs60729070 chr9:98514772 G/T 4.69E-9 116 46.6 41.7 34.87 KM Plot
THYM rs60761027 chr4:9645910 A/C 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs60813326 chr2:30689575 A/ACT 1.29E-8 119 37.37 50.07 33.13 KM Plot
THYM rs60844426 chr11:125580588 CT/C 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs6087196 chr20:29507723 T/A 3.19E-13 117 38.33 50.1 6 KM Plot